Installation¶
It is advised to work with a conda environment.
Installation from yml file¶
A environment.yml is provided. This will install all the dependencies, even the optative ones. If you want to select just some of them, check maual installation.
conda create -n registration_tools -f environment.yml
Manual installation¶
Requirements:
Python version:
python>=3.11.11
conda create -n registration_tools python=3.11
conda activate registration_tools #To activate environment
Compulsory packages:
h5py
zarr>=3.0.3
scikit-image
#Assuming you are inside the environment (registration_tools)
conda install h5py zarr>=3.0.3 scikit-image
Additional packages
vt-python: In case yuo want to register files. Installation docs (here)[https://gitlab.inria.fr/morpheme/vt-python].
#Assuming you are inside the environment (registration_tools)
conda install vt-python -c morpheme
napari: If you want to visualize the data. Installation docs (here)[https://napari.org/dev/tutorials/fundamentals/installation.html].
pyqt: Required by napari. Other alternatives in napari docs.
#Assuming you are inside the environment (registration_tools)
conda install napari pyqt -c conda-forge
conda update napari #From documentation of napari, sometimes help is after installation napari has not find pyqt correctly